Segmentation of same intensity bones using ITK

Algorithms
1

Hello everyone,

I have a CT dataset of lower part of human body in DICOM images. I need to separate the femur and tibia bone separately from the dataset. For that obviously i cannot use thresholding because the femur and tibia have same intensities.
So I have used region growing method, ITK confidence connected image filter, but I cannot able to segment the bone.
In what logic i should segment ?

2

That is a non-trivial problem. Take a look at:

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3

Hello @KSJ,

I believe TotalSegmentator is able to do this. They have an online tool and you can also use it via the slicer totalsegmentator extension.

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