Here is the problem and solution proposal I am planning to develop.
Problem: I wish to segment HEAD-TO-TOE CT scan and identify organs from it. For example which slices has Heart or which has Bladder or which slices has Brain.
Proposal: Since each tissue has defined range in HU units I can use Windowing formula to find corresponding pixel intensity range for each tissue. Once I get pixel intensity range I can use Simple Binary Thresholding and then using Label Statistics filter I can get Bounding box information. Challenge is each organ is made of different tissue densities and I am not sure if Binary Thresholding approach I am planning to implement will give robust results.
Any thoughts on above or any other ideas where ITK can help me solve this segmentation problem?