I need to do brain extraction from a number of MRI time series (DSC perfusion data). I found this itk module which, unless I am missing something doesn’t seem to support 4D sequences. I can load my DICOM files as a time-indexed list of 3D volumes and process each one sequentially. I am unsure how I combine these multiple 3D Volumes into a single MultiVolume (which hopefully I can save as a .nrrd file or similar).
Awesome, thanks. Sorry, I should have looked at the available filters list before posting a question