How to convert vascular segmentation result to “VascularNetwork.tre” file?

TaoH · April 15, 2020, 5:50pm

Hello!
I kown that TubeTK can convert “VascularNetwork.tre” file to vascular image. However, I want to convert a vascular segmentation result to the unbranched segments represented by centerline points and radius, like “VascularNetwork.tre” file.
Do you have any advance for me? Thans a lot!
Best Wishes,
TaoH

dzenanz · April 15, 2020, 6:42pm

@Stephen_Aylward might have some advice.

TaoH · April 22, 2020, 5:18pm

I think that this problem could be solved with TubeTK. Could you have any advice? Thanks! @Stephen_Aylward

Stephen_Aylward · September 29, 2020, 4:21am

Hi,

Sorry for the delay in responding, but I just merged changes to TubeTK to support segmenting vessel models (centerlines and radii) from binary images of vessels. See
https://github.com/InsightSoftwareConsortium/ITKTubeTK/pull/31
and the example, below, which was generated by the jupyter notebook in that merge.