I had a bunch of microscopy image in a .tif or a .czi extension but I manage to convert it into Dicom standard format using pydicom. Moreover, after conversion now I have a sequence of Dicom image like from (0-119, each subject has 1316x1316x120 (x,y,z)) for one subject. My goal is to transform this sequence of 2D .dcm image into 3D using ITK and VTK.
So, my question is: Is it possible to perform 3D reconstruction using ITK and VTK for this kind of image, if yes then how can I perform it?
I am using macOS and I want to perform all these operations of python if possible.
It would be great if anyone suggests me some steps related to it or suggest me some better idea to perform 3D reconstruction.