Brain mask for human brain registration

Algorithms
1

Hello,

I am currently working on a project of within subject registration of T1 and T2 images on human brains, and I want to add a brain mask to the registration. Does ITK have a class for automated brain extraction? Any suggestions? Thanks!

Best regards,
Fang

2

Hello,

You may want to look into the Skull Stripping remote module:
https://itk.org/Doxygen/html/classitk_1_1StripTsImageFilter.html

1 Like
3

Thanks!

4

You can give this filter a try in 3D Slicer (it comes with a GUI, so you don’t need to do any scripting or compilation): https://www.slicer.org/wiki/Documentation/Nightly/Modules/SwissSkullStripper

1 Like