Wrap itk.MultiResolutionPDEDeformableRegistration to Python

Engineering
1

Hi all,

Could someone help to wrap itk.MultiResolutionPDEDeformableRegistration to Python? As a result, I can use multi-resolution deformable registration. Thanks in advance.

Regards,

Zhuangming Shen

2

Dear Zhuangming,
the ITK Software Guide contains a section (9.5 Wrapping) devoted to explain how wrapping can be done in ITK.

Each module contains a wrapping folder, where the *.warp files are located. You can get some inspiration by reading the mentioned section and having a look at some of the existing wrap files.

You may want to read the CONTRIBUTING guide to submit a topic for revision, and hence, be the author of such a great contribution !

Let us know if you find difficulties.

1 Like
3

Dear @zhuangming.shen,
a topic was submitted to gerrit for review with the wrap file of the mentioned filter:
http://review.source.kitware.com/#/c/23203/

Could you please test the patch set and tell us if you can use it locally with no issues?

Thanks.

4

Dear @jhlegarreta,

Thanks for your effort. I just downloaded the latest ITK source code from github and compiled it. I enabled ITKV3_COMPATIBILITY, but disabled Module_ITKv4Compatibility. After that, I still cannot run itk.MultiResolutionPDEDeformableRegistration. Did I do something wrong?

Regards,

Zhuangming Shen

itkMultiResolutionPDEDeformableRegistration%20issue
itkMultiResolutionPDEDeformableRegistration issue.PNG727Ɨ309 12.2 KB

1 Like
5

Thanks for trying.

Please notice that the topic has not been merged into ITK master. In order to test the Python wrap of the class you will need to checkout the topic:

git fetch http://review.source.kitware.com/ITK refs/changes/03/23203/2 && git checkout FETCH_HEAD
git checkout -b AddWrappingToMultiResolutionPDEDeformableRegistration-for-release

Then try to use it.

Please let us know the result of this.

2 Likes
6

Hi @jhlegarreta,

I tried again but encountered some errorsā€¦

ITK_errors
ITK_errors.PNG2551Ɨ969 334 KB

7

Thanks for testing @zhuangming.shen !

@fbudin @matt.mccormick does this ring a bell to you?

8

@zhuangming.shen Could you please try building with the ITKV3_COMPATIBILITY CMake option OFF? It should address the build error per:

https://github.com/InsightSoftwareConsortium/ITK/blob/efd0109a4d8db70ed7490487a410ed70255b48dc/Modules/Registration/PDEDeformable/include/itkMultiResolutionPDEDeformableRegistration.h#L174-L190

1 Like
9

Hi @matt.mccormick and @jhlegarreta,

Thanks for your responses. It can work now.

2 Likes
10

The topic has been merged into master.
@zhuangming.shen thanks for testing ! @matt.mccormick thanks for merging !