Mismatched dimensions error


I have a segmentation image of a main image. however, when I try to open the segmentation image on top of the main image, I received an error, “mismatched dimensions”. the main image dimension is 300, 450, 450, while the segmentation image dimension is 450, 450, 300. I think this is because the name of dimension x, y, z is mismatched. But how could I solve this problem?


ITK-SNAP requires segmentation image to match the main image in index space. Slicer does not require that, so I suggest you try it. Slicer, too, is built on top of ITK.