I need to use ITKTwoProjectionRegistration with python3.9, however, the binary wheel from pypi only support for python<=3.8. So I tried to build it myself following this tutorial
I have successfully download docker then run
cd ~/ITKTwoProjectionRegistration
git clone https://github.com/InsightSoftwareConsortium/ITKPythonPackage
./ITKPythonPackage/scripts/dockcross-manylinux-download-cache-and-build-module-wheels.sh
But the build failed, here is complete output of terminal:
USER:~/ITKTwoProjectionRegistration$ sudo ./ITKPythonPackage/scripts/dockcross-manylinux-download-cache-and-build-module-wheels.sh
Fetching https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKPythonPackage/v5.3.0/scripts/dockcross-manylinux-download-cache.sh
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0curl: (7) Failed to connect to raw.githubusercontent.com port 443: Connection refused
chmod: cannot access 'dockcross-manylinux-download-cache.sh': No such file or directory
./ITKPythonPackage/scripts/dockcross-manylinux-download-cache-and-build-module-wheels.sh: line 69: ./dockcross-manylinux-download-cache.sh: No such file or directory
Building module wheels
Unable to find image 'dockcross/manylinux_2_28-x64:20230106-1aeaea0' locally
20230106-1aeaea0: Pulling from dockcross/manylinux_2_28-x64
3239c63efc84: Pulling fs layer
772270f4eeb0: Pulling fs layer
1bd9763c7560: Pulling fs layer
f912493fbc67: Pulling fs layer
e67bb4903160: Pulling fs layer
c56f03bb6bc0: Pulling fs layer
832c2a8e4491: Pulling fs layer
7c221cd720fe: Pulling fs layer
1b8dfe99e183: Pulling fs layer
39f0ea08a76c: Pulling fs layer
391f21a370b4: Pulling fs layer
e2bcfc885f2b: Pulling fs layer
d1d7a8c7ae1a: Pulling fs layer
f6108b8daef2: Pulling fs layer
f2c32ff93f39: Pulling fs layer
e67bb4903160: Waiting
4f4fb700ef54: Pulling fs layer
908fbf41b45c: Pulling fs layer
872e27585d51: Pulling fs layer
fb4a0c119ee2: Pulling fs layer
b4dcc75110d7: Pulling fs layer
bd37f4e53a35: Pulling fs layer
a3ee60d1d341: Pulling fs layer
10e63d14836d: Pulling fs layer
e39bf648123d: Pulling fs layer
c56f03bb6bc0: Waiting
587184fb8579: Pulling fs layer
832c2a8e4491: Waiting
d1d7a8c7ae1a: Waiting
c811e73378a6: Pulling fs layer
ecc79205ba48: Pulling fs layer
f6108b8daef2: Waiting
872e27585d51: Waiting
f2c32ff93f39: Waiting
4f4fb700ef54: Waiting
bd37f4e53a35: Waiting
5444d52fe7f0: Pulling fs layer
e39bf648123d: Waiting
f912493fbc67: Waiting
636e17929669: Pulling fs layer
1771c20fe4c0: Pulling fs layer
587184fb8579: Waiting
71aac75e819e: Pulling fs layer
786317a2edc0: Pulling fs layer
a3ee60d1d341: Waiting
84324f7d8f77: Pulling fs layer
33642bd99cc8: Pulling fs layer
10e63d14836d: Waiting
e2bcfc885f2b: Waiting
1b8dfe99e183: Waiting
c811e73378a6: Waiting
37533d5ff3c0: Pulling fs layer
2c4eb121e2f2: Pulling fs layer
391f21a370b4: Waiting
33642bd99cc8: Waiting
b4dcc75110d7: Waiting
de5c4f67a60b: Pulling fs layer
71aac75e819e: Waiting
5444d52fe7f0: Waiting
37533d5ff3c0: Waiting
1771c20fe4c0: Waiting
84324f7d8f77: Waiting
de5c4f67a60b: Waiting
fb4a0c119ee2: Waiting
39f0ea08a76c: Waiting
2c4eb121e2f2: Waiting
786317a2edc0: Waiting
ecc79205ba48: Waiting
772270f4eeb0: Download complete
1bd9763c7560: Verifying Checksum
1bd9763c7560: Download complete
f912493fbc67: Verifying Checksum
f912493fbc67: Download complete
e67bb4903160: Verifying Checksum
e67bb4903160: Download complete
c56f03bb6bc0: Download complete
7c221cd720fe: Verifying Checksum
7c221cd720fe: Download complete
1b8dfe99e183: Verifying Checksum
1b8dfe99e183: Download complete
39f0ea08a76c: Download complete
3239c63efc84: Verifying Checksum
3239c63efc84: Download complete
391f21a370b4: Download complete
3239c63efc84: Pull complete
772270f4eeb0: Pull complete
1bd9763c7560: Pull complete
f912493fbc67: Pull complete
e67bb4903160: Pull complete
c56f03bb6bc0: Pull complete
e2bcfc885f2b: Verifying Checksum
e2bcfc885f2b: Download complete
d1d7a8c7ae1a: Download complete
f2c32ff93f39: Download complete
f6108b8daef2: Download complete
4f4fb700ef54: Verifying Checksum
4f4fb700ef54: Download complete
908fbf41b45c: Verifying Checksum
908fbf41b45c: Download complete
872e27585d51: Verifying Checksum
872e27585d51: Download complete
b4dcc75110d7: Verifying Checksum
b4dcc75110d7: Download complete
bd37f4e53a35: Verifying Checksum
bd37f4e53a35: Download complete
832c2a8e4491: Verifying Checksum
832c2a8e4491: Download complete
832c2a8e4491: Pull complete
7c221cd720fe: Pull complete
1b8dfe99e183: Pull complete
39f0ea08a76c: Pull complete
391f21a370b4: Pull complete
e2bcfc885f2b: Pull complete
d1d7a8c7ae1a: Pull complete
f6108b8daef2: Pull complete
f2c32ff93f39: Pull complete
4f4fb700ef54: Pull complete
908fbf41b45c: Pull complete
872e27585d51: Pull complete
fb4a0c119ee2: Verifying Checksum
fb4a0c119ee2: Download complete
e39bf648123d: Verifying Checksum
e39bf648123d: Download complete
fb4a0c119ee2: Pull complete
b4dcc75110d7: Pull complete
bd37f4e53a35: Pull complete
a3ee60d1d341: Verifying Checksum
a3ee60d1d341: Download complete
a3ee60d1d341: Pull complete
c811e73378a6: Verifying Checksum
c811e73378a6: Download complete
ecc79205ba48: Verifying Checksum
ecc79205ba48: Download complete
10e63d14836d: Download complete
10e63d14836d: Pull complete
e39bf648123d: Pull complete
636e17929669: Verifying Checksum
636e17929669: Download complete
5444d52fe7f0: Verifying Checksum
1771c20fe4c0: Verifying Checksum
1771c20fe4c0: Download complete
786317a2edc0: Verifying Checksum
786317a2edc0: Download complete
84324f7d8f77: Verifying Checksum
84324f7d8f77: Download complete
33642bd99cc8: Verifying Checksum
33642bd99cc8: Download complete
37533d5ff3c0: Download complete
2c4eb121e2f2: Verifying Checksum
2c4eb121e2f2: Download complete
de5c4f67a60b: Download complete
71aac75e819e: Verifying Checksum
587184fb8579: Verifying Checksum
587184fb8579: Download complete
587184fb8579: Pull complete
c811e73378a6: Pull complete
ecc79205ba48: Pull complete
5444d52fe7f0: Pull complete
636e17929669: Pull complete
1771c20fe4c0: Pull complete
71aac75e819e: Pull complete
786317a2edc0: Pull complete
84324f7d8f77: Pull complete
33642bd99cc8: Pull complete
37533d5ff3c0: Pull complete
2c4eb121e2f2: Pull complete
de5c4f67a60b: Pull complete
Digest: sha256:fac2d30546de9a653896b075155a466d137d04eb8342cc6a7c010d24c843dcdf
Status: Downloaded newer image for dockcross/manylinux_2_28-x64:20230106-1aeaea0
++++ dirname /ITKPythonPackage/scripts/internal/manylinux-build-module-wheels.sh
+++ cd /ITKPythonPackage/scripts/internal
+++ pwd
++ script_dir=/ITKPythonPackage/scripts/internal
++ [[ 0 -eq 0 ]]
++ PYBIN=(/opt/python/*/bin)
++ PYBINARIES=()
++ for version in "${PYBIN[@]}"
++ [[ /opt/python/cp310-cp310/bin == *\c\p\3\7* ]]
++ [[ /opt/python/cp310-cp310/bin == *\c\p\3\8* ]]
++ [[ /opt/python/cp310-cp310/bin == *\c\p\3\9* ]]
++ [[ /opt/python/cp310-cp310/bin == *\c\p\3\1\0* ]]
++ PYBINARIES+=(${version})
++ for version in "${PYBIN[@]}"
++ [[ /opt/python/cp311-cp311/bin == *\c\p\3\7* ]]
++ [[ /opt/python/cp311-cp311/bin == *\c\p\3\8* ]]
++ [[ /opt/python/cp311-cp311/bin == *\c\p\3\9* ]]
++ [[ /opt/python/cp311-cp311/bin == *\c\p\3\1\0* ]]
++ [[ /opt/python/cp311-cp311/bin == *\c\p\3\1\1* ]]
++ PYBINARIES+=(${version})
++ for version in "${PYBIN[@]}"
++ [[ /opt/python/cp36-cp36m/bin == *\c\p\3\7* ]]
++ [[ /opt/python/cp36-cp36m/bin == *\c\p\3\8* ]]
++ [[ /opt/python/cp36-cp36m/bin == *\c\p\3\9* ]]
++ [[ /opt/python/cp36-cp36m/bin == *\c\p\3\1\0* ]]
++ [[ /opt/python/cp36-cp36m/bin == *\c\p\3\1\1* ]]
++ for version in "${PYBIN[@]}"
++ [[ /opt/python/cp37-cp37m/bin == *\c\p\3\7* ]]
++ PYBINARIES+=(${version})
++ for version in "${PYBIN[@]}"
++ [[ /opt/python/cp38-cp38/bin == *\c\p\3\7* ]]
++ [[ /opt/python/cp38-cp38/bin == *\c\p\3\8* ]]
++ PYBINARIES+=(${version})
++ for version in "${PYBIN[@]}"
++ [[ /opt/python/cp39-cp39/bin == *\c\p\3\7* ]]
++ [[ /opt/python/cp39-cp39/bin == *\c\p\3\8* ]]
++ [[ /opt/python/cp39-cp39/bin == *\c\p\3\9* ]]
++ PYBINARIES+=(${version})
++ for version in "${PYBIN[@]}"
++ [[ /opt/python/pp37-pypy37_pp73/bin == *\c\p\3\7* ]]
++ [[ /opt/python/pp37-pypy37_pp73/bin == *\c\p\3\8* ]]
++ [[ /opt/python/pp37-pypy37_pp73/bin == *\c\p\3\9* ]]
++ [[ /opt/python/pp37-pypy37_pp73/bin == *\c\p\3\1\0* ]]
++ [[ /opt/python/pp37-pypy37_pp73/bin == *\c\p\3\1\1* ]]
++ for version in "${PYBIN[@]}"
++ [[ /opt/python/pp38-pypy38_pp73/bin == *\c\p\3\7* ]]
++ [[ /opt/python/pp38-pypy38_pp73/bin == *\c\p\3\8* ]]
++ [[ /opt/python/pp38-pypy38_pp73/bin == *\c\p\3\9* ]]
++ [[ /opt/python/pp38-pypy38_pp73/bin == *\c\p\3\1\0* ]]
++ [[ /opt/python/pp38-pypy38_pp73/bin == *\c\p\3\1\1* ]]
++ for version in "${PYBIN[@]}"
++ [[ /opt/python/pp39-pypy39_pp73/bin == *\c\p\3\7* ]]
++ [[ /opt/python/pp39-pypy39_pp73/bin == *\c\p\3\8* ]]
++ [[ /opt/python/pp39-pypy39_pp73/bin == *\c\p\3\9* ]]
++ [[ /opt/python/pp39-pypy39_pp73/bin == *\c\p\3\1\0* ]]
++ [[ /opt/python/pp39-pypy39_pp73/bin == *\c\p\3\1\1* ]]
++ case $(uname -m) in
+++ uname -m
++ ARCH=x64
++ export PATH=/work/tools/doxygen-1.8.16/bin:/opt/rh/gcc-toolset-11/root/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/work/tools/doxygen-1.8.16/bin:/opt/rh/gcc-toolset-11/root/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ case $(uname -m) in
+++ uname -m
++ type doxygen
++ mkdir -p /work/tools
++ pushd /work/tools
++ curl https://data.kitware.com/api/v1/file/62c4d615bddec9d0c46cb705/download -o doxygen-1.8.16.linux.bin.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 7319k 100 7319k 0 0 747k 0 0:00:09 0:00:09 --:--:-- 1089k
++ tar -xvzf doxygen-1.8.16.linux.bin.tar.gz
./doxygen-1.8.16/
./doxygen-1.8.16/bin/
./doxygen-1.8.16/bin/doxygen
++ popd
++ type ninja
++ MANYLINUX_VERSION=_2_28
++ echo 'Building wheels for x64 using manylinux_2_28'
Building wheels for x64 using manylinux_2_28
+ sudo ldconfig
+ export LD_LIBRARY_PATH=/opt/rh/gcc-toolset-11/root/usr/lib64:/opt/rh/gcc-toolset-11/root/usr/lib:/opt/rh/gcc-toolset-11/root/usr/lib64/dyninst:/opt/rh/gcc-toolset-11/root/usr/lib/dyninst:/work/oneTBB-prefix/lib:/usr/lib:/usr/lib64:/usr/local/lib:/usr/local/lib64
+ LD_LIBRARY_PATH=/opt/rh/gcc-toolset-11/root/usr/lib64:/opt/rh/gcc-toolset-11/root/usr/lib:/opt/rh/gcc-toolset-11/root/usr/lib64/dyninst:/opt/rh/gcc-toolset-11/root/usr/lib/dyninst:/work/oneTBB-prefix/lib:/usr/lib:/usr/lib64:/usr/local/lib:/usr/local/lib64
+ for PYBIN in "${PYBINARIES[@]}"
+ Python3_EXECUTABLE=/opt/python/cp310-cp310/bin/python
++ find -L /opt/python/cp310-cp310/bin/../include/ -name Python.h -exec dirname '{}' ';'
+ Python3_INCLUDE_DIR=/opt/python/cp310-cp310/bin/../include/python3.10
+ echo ''
+ echo Python3_EXECUTABLE:/opt/python/cp310-cp310/bin/python
Python3_EXECUTABLE:/opt/python/cp310-cp310/bin/python
+ echo Python3_INCLUDE_DIR:/opt/python/cp310-cp310/bin/../include/python3.10
Python3_INCLUDE_DIR:/opt/python/cp310-cp310/bin/../include/python3.10
+ [[ -e /work/requirements-dev.txt ]]
+ [[ -e /ITKPythonPackage/requirements-dev.txt ]]
+ /opt/python/cp310-cp310/bin/pip install --upgrade -r /ITKPythonPackage/requirements-dev.txt
Collecting ninja==1.11.1
Downloading ninja-1.11.1-py2.py3-none-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (145 kB)
ββββββββββββββββββββββββββββββββββββββββ 146.0/146.0 kB 570.2 kB/s eta 0:00:00
Collecting scikit-build==0.16.2
Downloading scikit_build-0.16.2-py3-none-any.whl (78 kB)
ββββββββββββββββββββββββββββββββββββββββ 78.1/78.1 kB 3.3 MB/s eta 0:00:00
Requirement already satisfied: packaging in /opt/_internal/cpython-3.10.8/lib/python3.10/site-packages (from scikit-build==0.16.2->-r /ITKPythonPackage/requirements-dev.txt (line 2)) (21.3)
Collecting distro
Downloading distro-1.8.0-py3-none-any.whl (20 kB)
Requirement already satisfied: setuptools>=42.0.0 in /opt/_internal/cpython-3.10.8/lib/python3.10/site-packages (from scikit-build==0.16.2->-r /ITKPythonPackage/requirements-dev.txt (line 2)) (65.6.0)
Requirement already satisfied: wheel>=0.32.0 in /opt/_internal/cpython-3.10.8/lib/python3.10/site-packages (from scikit-build==0.16.2->-r /ITKPythonPackage/requirements-dev.txt (line 2)) (0.38.4)
Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /opt/_internal/cpython-3.10.8/lib/python3.10/site-packages (from packaging->scikit-build==0.16.2->-r /ITKPythonPackage/requirements-dev.txt (line 2)) (3.0.9)
Installing collected packages: ninja, distro, scikit-build
Attempting uninstall: scikit-build
Found existing installation: scikit-build 0.8.1
Uninstalling scikit-build-0.8.1:
Successfully uninstalled scikit-build-0.8.1
Successfully installed distro-1.8.0 ninja-1.11.1 scikit-build-0.16.2
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
[notice] A new release of pip available: 22.3.1 -> 23.1.2
[notice] To update, run: /opt/_internal/cpython-3.10.8/bin/python -m pip install --upgrade pip
+++ dirname /opt/python/cp310-cp310/bin
++ basename /opt/python/cp310-cp310
+ version=cp310-cp310
+ version=cp310-cp3
++ basename '/ITKPythonPackage/ITK-cp310-cp3*-manylinux_2_28_x64'
+ itk_build_dir='/work/ITK-cp310-cp3*-manylinux_2_28_x64'
+ ln -fs '/ITKPythonPackage/ITK-cp310-cp3*-manylinux_2_28_x64' '/work/ITK-cp310-cp3*-manylinux_2_28_x64'
+ [[ ! -d /work/ITK-cp310-cp3*-manylinux_2_28_x64 ]]
+ echo 'ITK build tree not available!'
ITK build tree not available!
+ exit 1
Cleaning up artifacts from module build
unlink: cannot unlink 'oneTBB-prefix': No such file or directory
How can fix this problem?