has anyone seen this error from GCC 9 or 11?
FAILED: Plugins/ITKImageProcessing/CMakeFiles/ITKImageProcessingServer.dir/ITKImageProcessingFilters/ITKImageReader.cpp.o
$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c++ -DH5Support_USE_MUTEX -DH5Support_USE_QT -DH5_BUILT_AS_DYNAMIC_LIB -DITKImageProcessingServer_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -DTBB_DEPRECATED=0 -DTBB_USE_CAPTURED_EXCEPTION=0 -I$SRC_DIR/build/Plugins/ITKImageProcessing -I$SRC_DIR/DREAM3D_Plugins/ITKImageProcessing -I$SRC_DIR/build/Plugins/ITKImageProcessing/ITKImageProcessingServer_autogen/include -I$SRC_DIR/DREAM3D_Plugins -I$SRC_DIR/build/Plugins -I$SRC_DIR/build/Plugins/ITKImageProcessing/ITKImageProcessingFilters -I$SRC_DIR/SIMPL/Source -I$SRC_DIR/build/SIMPLView/SIMPL -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/Common -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/DataArrays -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/DataContainers -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/Geometry -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/HDF5 -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/Math -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/Messages -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/Montages -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/StatsData -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/Utilities -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/ITK -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/Filtering -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/FilterParameters -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/VTKUtils -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/Plugin -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/CoreFilters -I$SRC_DIR/build/SIMPLView/SIMPL/SIMPLib/TestFilters -I$SRC_DIR/H5Support/Source -isystem $PREFIX/include/ITK-5.2 -isystem $PREFIX/include/qt -isystem $PREFIX/include/qt/QtCore -isystem $PREFIX/./mkspecs/linux-g++ -isystem $PREFIX/include/qt/QtXml -isystem $PREFIX/include/eigen3 -isystem $PREFIX/include/qt/QtNetwork -fvisibility-inlines-hidden -std=c++17 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/dream3d-conda-1.4.1 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -O3 -DNDEBUG -fPIC -fPIC -fmessage-length=0 -std=c++17 -fPIC -MD -MT Plugins/ITKImageProcessing/CMakeFiles/ITKImageProcessingServer.dir/ITKImageProcessingFilters/ITKImageReader.cpp.o -MF Plugins/ITKImageProcessing/CMakeFiles/ITKImageProcessingServer.dir/ITKImageProcessingFilters/ITKImageReader.cpp.o.d -o Plugins/ITKImageProcessing/CMakeFiles/ITKImageProcessingServer.dir/ITKImageProcessingFilters/ITKImageReader.cpp.o -c $SRC_DIR/DREAM3D_Plugins/ITKImageProcessing/ITKImageProcessingFilters/ITKImageReader.cpp
{standard input}: Assembler messages:
{standard input}:2278007: Warning: end of file not at end of a line; newline inserted
{standard input}: Error: open CFI at the end of file; missing .cfi_endproc directive
x86_64-conda-linux-gnu-c++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
This is when building against libitk and libitk-devel versions 5.2.1 and 5.2.0. Both throw the error. here is a snippet from our CMake run of our project:
-- The C compiler identification is GNU 9.4.0
-- The CXX compiler identification is GNU 9.4.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found PythonInterp: $PREFIX/bin/python (found version "3.8.10")
-- Found PythonLibs: $PREFIX/lib/libpython3.8.so
There is 32GB of RAM and a 10 Core Xeon processor. Plenty of HD space. Plenty of RAM for this kind of compile.
https://www.github.com/bluequartzsoftware/dream3d-conda-feedstock is the repo that we are trying. So far this has failed on both a Ubuntu 18.04 and 20.04 host system. Both systems are using the same anaconda installation.