Now I am using ANTS toolbox, which is based on the ITK, to registe my images to the template but i found the following error:
WARNING: In /usr/include/ITK-4.10/itkTransformFactoryBase.h, line 81
TransformFactoryBase (0x555e9eb4e430): Refusing to register transform “MatrixOffsetTransformBase_double_3_3” again!
Does anyone has idea about it? Any suggestions would be greatly appreciated! Thanks in advance!