Hello,
Thanks for your effort for InsightToolkit-5.1rc3! And I have installed tubetk with pip install itk-tubetk. The bug was reported when I tested the example ConvertTubesToImage.ipynb
How can I handle the problem?
Thank you for help!
TaoH
Hello @TaoH,
You should observe this:
What are the versions of the itk packages? Ensure they are updated to 5.1rc3 with:
python -m pip install --upgrade pip
python -m pip install --upgrade --pre itk
Hello,
Thanks for your reply! I confirm that I install InsightToolkit-5.1rc3. And ITKSpatialObjects-SimpleExample.ipynb is no problem for testing, but the bug is reported in ConvertTubesToImage.ipynb.
Best Wishes,
TaoH
Thanks, I will try to reproduce this.
Hello @TaoH,
A new version of itk-tubetk is available – please try
python -m pip install --upgrade itk-tubetk itk itkwidgets
Hello,
Thanks for your efforts! I have run the command that you recommended. However, I have another problem in this project.
I think that this problem is in itk. Colud you provide some advice?
Best Wishes,
TaoH
Hi,
What Python version do you have?
Hi,
is there any update on this? I’ve basically run into the same problem. I’ve created a new conda environment using the following steps.
conda create --name tubetk python
conda activate tubetk2
pip install user ipykernel
conda install jupyter
pip install --pre itk
pip install itk-tubetk
pip install itkwidgets
When I try to run the second cell in ComputeVesselProbabilityImageFromBrainMRIs.ipynb, I first get this error message:
ModuleNotFoundError: No module named '_itkInterpolateImageFunctionPython'
When I run the cell a second time, however, I receive:
AttributeError: module 'itk.TubeTKPython' has no attribute 'swig'
We are working on a new package version.
itk-tubetk version 0.2.1 packages are available, installable with:
python -m pip install --upgrade itk-tubetk