Centerline.tre file created correctly. But there is no points in BranchCenterline_0.fcsv file. We got message in log that is “BGFDG_vtkMRMLModelNodeH.vtp does not contain coordinate system information” .
I have attached centerline.tre and branchcenterline.fcsv file for more information.
Found SharedObject Module
ModuleType: SharedObjectModule
Minimal Path Extraction (TubeTK) command line:
slicer:00007FF8795827DD --processinformationaddress 00000186033C2F48 --startPoint 6.95889,-192.19,1137.97 --targetPoint -0.000125,-159.926,1269.97 --bendInBranchVesselOption NoBend --connectionOption Connect_To_Target_Tube_Surface --startRadius 2 --maxRadius 6 --stepRadius 0.5 --optimizer Regular_Step_Gradient_Descent --terminationValue 0.5 --numberOfIterations 10000 --stepLengthFactor 0.1 --stepLengthRelax 0.999 slicer:00000185FEB10D80#vtkMRMLScalarVolumeNode4 D:/Data Set/SET43/ProcessedImages/PreOp/Results_100406/Centerlines/Centerline.tre
Minimal Path Extraction (TubeTK) standard output:
System: INBASDLP12595
Processor: Unknown P6 family
Cache: -1
Clock: 2208
Physical CPUs: 4
Logical CPUs: 8
Virtual Memory: Total: 29452 Available: 15928
Physical Memory: Total: 7948 Available: 1078
OSName: Windows
Release: Professional
Version: (Build 9200)
Platform: AMD64
Operating System is 64 bit
ITK Version: 5.2.0
Name Of Probe (Time) Iterations Total (s) Min (s) Mean (s) Max (s) StdDev (s)
Extract minimal path 1 0.119767 0.119767 0.119767 0.119767 0
Load data 1 0.0201144 0.0201144 0.0201144 0.0201144 0
Set parameters 1 2.24113e-05 2.24113e-05 2.24113e-05 2.24113e-05 0
Write output data 1 0.0607877 0.0607877 0.0607877 0.0607877 0
Found SharedObject Module
ModuleType: SharedObjectModule
ExtractTubeRadius command line:
slicer:00007FF8783034A3 --processinformationaddress 00000186033C35D8 slicer:00000185FEB10D80#vtkMRMLScalarVolumeNode4 D:/Data Set/SET43/ProcessedImages/PreOp/Results_100406/Centerlines/Centerline.tre
ExtractTubeRadius standard output:
Reading input volume…
Writing output tubes…
System: INBASDLP12595
Processor: Unknown P6 family
Cache: -1
Clock: 2208
Physical CPUs: 4
Logical CPUs: 8
Virtual Memory: Total: 29452 Available: 16025
Physical Memory: Total: 7948 Available: 934
OSName: Windows
Release: Professional
Version: (Build 9200)
Platform: AMD64
Operating System is 64 bit
ITK Version: 5.2.0
Name Of Probe (Time) Iterations Total (s) Min (s) Mean (s) Max (s) StdDev (s)
Calculating Radius 1 1.42257 1.42257 1.42257 1.42257 0
Loading Input Volume File 1 0.023268 0.023268 0.023268 0.023268 0
Read tubes 1 0.0250897 0.0250897 0.0250897 0.0250897 0
Writing Output tubes 1 0.0538156 0.0538156 0.0538156 0.0538156 0
Found SharedObject Module
ModuleType: SharedObjectModule
Convert Tubes to Surface (TubeTK) command line:
slicer:00007FF878F9FC0E --processinformationaddress 00000186033C91B8 --centerline C:/Users/MT00716003/AppData/Local/Temp/G/BGFDG_vtkMRMLModelNodeF.vtp D:/Data Set/SET43/ProcessedImages/PreOp/Results_100406/Centerlines/Centerline.tre D:/Data Set/SET43/ProcessedImages/PreOp/Results_100406/Centerlines/CenterlineAsSrf.vtk
Convert Tubes to Surface (TubeTK) standard output:
Number of children = 1
System: INBASDLP12595
Processor: Unknown P6 family
Cache: -1
Clock: 2207
Physical CPUs: 4
Logical CPUs: 8
Virtual Memory: Total: 29452 Available: 16164
Physical Memory: Total: 7948 Available: 1132
OSName: Windows
Release: Professional
Version: (Build 9200)
Platform: AMD64
Operating System is 64 bit
ITK Version: 5.2.0
Name Of Probe (Time) Iterations Total (s) Min (s) Mean (s) Max (s) StdDev (s)
Convert to surface 1 0.0368712 0.0368712 0.0368712 0.0368712 0
Read tubes 1 0.0269647 0.0269647 0.0269647 0.0269647 0
Write polydata file 1 0.421149 0.421149 0.421149 0.421149 0
ReadDataInternal (vtkMRMLModelStorageNode2): File C:/Users/MT00716003/AppData/Local/Temp/G/BGFDG_vtkMRMLModelNodeF.vtp does not contain coordinate system information. Assuming LPS.