I’m working with microscopy images from lab equipment and want to process/analyze them using ITK. What filters or techniques would you recommend for tasks like cell counting, image segmentation, or noise reduction? Any guidance for someone getting started would be appreciated.
@blowekamp If I remember correctly, you have been working with microscopy images recently.
Hello @Alexia_Fison,
Welcome to the ITK/SimpleITK ecosystem!
Please take a look at the SimpleITK napari plugin for microscopy related tasks using SimpleITK.
I would recommend exploring the napari ecosystem and their tutorials before you implement any workflow on your own. This is a modern microscopy image analysis environment. For a more old school solution with many filters and workflows see the Fiji eco-system. Both are free open source projects so you should be able to modify to your needs.
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